PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G020700.1
Common NameB456_008G020700, LOC105762775
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 234aa    MW: 25210 Da    PI: 8.497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G020700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002685107123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ykC+ C+k F++   L  H  +H
  Gorai.008G020700.1  85 YKCSVCNKAFPSYQALGGHKASH 107
                         9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.11E-885156No hitNo description
SMARTSM003550.005785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.24285112IPR007087Zinc finger, C2H2
PfamPF139122.6E-1485109IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM003550.19134156IPR015880Zinc finger, C2H2-like
PfamPF139124.1E-13134158IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411134156IPR007087Zinc finger, C2H2
PROSITE patternPS000280136156IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MALEALNSPT MPTPFTNKYD DVDTWKKGKR SKRLRTDSPT TPTTEEEHLA LCLIMLARGS  60
PQGAAHHHPH SSSSSAHPLH LNLSYKCSVC NKAFPSYQAL GGHKASHRKP STAQNPSITT  120
ETNAAGSSGR GRSHECSICH KSFPTGQALG GHKRCHYEGG NNNSSSYKSG SVSGVTLSDG  180
GALSQSHRLN FDFDLNMPAC VENEDGRFGQ IYAEQEVESP LPTKKPHVLM VKE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ8377020.0JQ837702.1 Gossypium hirsutum cultivar ZM3 ZFP mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436122.11e-175PREDICTED: zinc finger protein ZAT10-like
SwissprotQ962898e-53ZAT10_ARATH; Zinc finger protein ZAT10
TrEMBLA0A0D2R7A31e-175A0A0D2R7A3_G
STRINGVIT_03s0091g00690.t015e-66(Vitis vinifera)
STRINGPOPTR_0001s30260.19e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-44salt tolerance zinc finger
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]